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Assignment #3: Mycobiome [[1]]
Original: Mycobiome From Wikipedia, the free encyclopedia The mycobiome consists of the fungal biota in an organism.[1][2][3] It can be affected by conditions such as human obesity.[4] References[edit source] 1. Jump up^ Cui L, Morris A, Ghedin E (July 2013). "The human mycobiome in health and disease". Genome Med. 5 (7): 63. PMC 3978422 . PMID 23899327. doi:10.1186/gm467. Figure 2: Distribution of fungal genera in different body sites 2. Jump up^ Mahmoud Ghannoum (February 1, 2016). "The Mycobiome". The Scientist (magazine). Retrieved February 5, 2016. 3. Jump up^ Suhr MJ, Hallen-Adams HE (2015). "The human gut mycobiome: pitfalls and potentials--a mycologist's perspective". Mycologia. 107 (6): 1057–73. PMID 26354806. doi:10.3852/15-147. 4. Jump up^ Mar Rodríguez, M.; Pérez, Daniel; Javier Chaves, Felipe; Esteve, Eduardo; Marin-Garcia, Pablo; Xifra, Gemma; Vendrell, Joan; Jové, Mariona; Pamplona, Reinald; Ricart, Wifredo; Portero-Otin, Manuel; Chacón, Matilde R.; Fernández Real, José Manuel (2015). "Obesity changes the human gut mycobiome". Scientific Reports. 5: 14600. Bibcode:2015NatSR...514600M. PMC 4600977 . PMID 26455903. doi:10.1038/srep14600.
Edit – Mycobiome
The mycobiome consists of the fungal biota in an organism.[1][2][3] It can be affected by conditions such as human obesity.[4] The fungal biota can be present in as low as ≤0.1% of the total human microbiota/microbiome. [1] And it is uncertain how the fungal biota interact with the nonfungal constituents of the microbiome. Overall, there is a low abundance of fungi in most biological specimens. The mycobiome is relevant to human physiology as fungi may be important in maintaining microbial community structure, metabolic function, and immune-priming. [2] [3] Mutualism between humans and fungi is not yet well understood.
Fungal Biota Present This is not an exhaustive list. Samples collected may have faced issues with sequencing of fungal sequences due to possible cell contamination.
Vaginal Mycobiome - Candida (16 taxonomic units) - Ascomycota - Saccharomycetales - Ascomycota Davidiellaceae - Cladosporium - Eurotium - Alternaria - Basidomycota Rhodotorula Intestinal Mycobiome - Saccharomyces - Candida - Cladosporium - Agaricus - S. boulardii (Infant) Intestinal Mycobiome - Saccharomycetales (infant) - Cladosporium - Cryptococcus - Saccharomyces cerevisiae - Malasseziales - Eurotiales - Botryosphaeriales - Filobasidiales [4] Oral Mycobiome - Candida - Saccharomyces - Penicillium - Aspergillus - Scopulariopsis - Genotrichum [5] [6] [7] [8] - Cryptococcus - Histoplasma - Mucor [9] - Cladosporium - Fusarium - Alternaria [10] - Malassezia - Epicoccum - Aureobasidium - Irpex, - Cytospora - Lenziles - Sporobolomyces - Dothioraceae - Teratosphaeria - Glomus [11] [12] - Pichia Lung Mycobiome - Aspergillus - Penicillium - Davidiellaceae - Candida [13]
- ^ Qin, J. "A human gut microbial gene catalogue established by metagenomic sequencing". NCBI PubMed.gov. Nature. Retrieved 8 October 2017.
- ^ Seed, Patrick. "The Human Mycobiome". NCBI PubMed.gov. Cold Spring Harb Perspect Med. Retrieved 8 October 2017.
- ^ Pflughoeft, KJ. "Human microbiome in health and disease". NCBI PubMed.gov. Annu Rev Pathol.
{{cite web}}:|access-date=requires|url=(help); Missing or empty|url=(help) - ^ LaTuga, MS. "Beyond bacteria: a study of the enteric microbial consortium in extremely low birth weight infants". NCBI PubMed.gov. PLoS One. Retrieved 8 October 2017.
- ^ Williams, DW. "Isolation and identification of Candida from the oral cavity". NCIB PubMed.gov. Oral Dis. Retrieved 8 October 2017.
- ^ Schuster, GS. "Oral flora and pathogenic organisms". NCIB PubMed.gov. Infect Dis Clin North Am. Retrieved 8 October 2017.
- ^ Salonen, JH. "Fungal colonization of haematological patients receiving cytotoxic chemotherapy: emergence of azole-resistant Saccharomyces cerevisiae". NCIB PubMed.gov. J Hosp Infect. Retrieved 8 October 2017.
- ^ Jabra-Rizk, MA. "Recovery of Candida dubliniensis and other yeasts from human immunodeficiency virus-associated periodontal lesions". MCIB PubMed.gov. J Clin Microbiol. Retrieved 8 October 2017.
- ^ Latta, R. "Rare mycoses of the oral cavity: a literature epidemiologic review". NCIB PubMed.gov. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. Retrieved 8 October 2017.
- ^ Ghannoum, MA. "Characterization of the oral fungal microbiome (mycobiome) in healthy individuals". NCIB PubMed.gov. PLos Pathog. Retrieved 8 October 2017.
- ^ Drupuy, AK. "Redefining the human oral mycobiome with improved practices in amplicon-based taxonomy: discovery of Malassezia as a prominent commensal". NCIB PubMed.gov. PLos One. Retrieved 8 October 2017.
- ^ Ghannoum, MA. "Characterization of the oral fungal microbiome (mycobiome) in healthy individuals". NCIB PubMed.gov. PLoS Pathog. Retrieved 8 October 2017.
- ^ Charlson, ES. "Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant". NCIB PubMed.gov. AM J Respir Crit Care Med. Retrieved 8 October 2017.
KaileeWark (talk) 06:55, 9 October 2017 (UTC)