mir-6 microRNA precursor
| mir-6 microRNA precursor | |
|---|---|
 Predicted secondary structure and sequence conservation of mir-6 | |
| Identifiers | |
| Symbol | mir-6 |
| Rfam | RF00143 |
| miRBase | MI0000124 |
| miRBase family | MIPF0000119 |
| Other data | |
| RNA type | Gene; miRNA |
| Domain(s) | Eukaryota |
| GO | GO:0035195 GO:0035068 |
| SO | SO:0001244 |
| PDB structures | PDBe |
The mir-6 microRNA precursor is a precursor microRNA specific to Drosophila species. In Drosophila melanogaster there are three mir-6 paralogs called dme-mir-6-1, dme-mir-6-2, dme-mir-6-3, which are clustered together in the genome. The extents of these hairpin precursors are estimated based on hairpin prediction. Each precursor is generated following the cleavage of a longer primary transcript in the nucleus, and is exported in the cytoplasm. In the cytoplasm, precursors are further processed by the enzyme Dicer, generating ~22 nucleotide products from each arm of the hairpin. The products generated from the 3' arm of each mir-6 precursor have identical sequences. Both 5' and 3' mature products are experimentally validated. Experimental data suggests that the mature products of mir-6 hairpins are expressed in the early embryo of Drosophila and target apoptotic genes such as hid, grim and rpr.[1]
Links to further miRNAs
Near perfect complementarity has been observed between miR-5 and miR-6 at 20/21 nucleotides.[2] However, miR-5 is only related on a minor level to any of the three respective miR-6 sequences. miR-6 genes reside in a gene cluster containing other non-K-box family miRNAs, including miRNAs-3 and-309, and the Brd box family gene mir-4. Alignment has shown miR-6 to share the same family motif as miR-11 and miR-2b, together making up the mir-2 clan. There is, however, little similarity in the 3' ends between these clan members.
Apoptotic regulation
mir-6 plays a key role in the regulation of early apoptosis. Indeed, there is a much increased apoptotic rate in miR-6-depleted embryos compared with control embryos, indicating that mir-6 acts to suppress apoptosis. The pro-apoptotic factor Hid is controlled solely by miR-6, which sees its regulation at a post-transcriptional level. miR-6-depleted embryos have been found to show the strongest phenotype of all miR-2 family members, explained by their interaction with hid, the pro-apoptotic gene with the broadest expression and strongest proapoptotic effect.[3] Embryos injected with mir-6 antisense failed to differentiate normal internal and external structures, with the number of apoptotic cells much increased compared to wildtype cells.[1] Further work into this with miR-6-depleted blastoderm embryos found pole cell formation at the posterior end of the anteroposterior axis to be disrupted, despite normality of both cellularisation and early pattern formation.[1]
References
- ^ a b c Leaman D, Chen PY, Fak J, Yalcin A, Pearce M, Unnerstall U, Marks DS, Sander C, Tuschl T, Gaul U (July 2005). "Antisense-mediated depletion reveals essential and specific functions of microRNAs in Drosophila development". Cell. 121 (7): 1097–108. doi:10.1016/j.cell.2005.04.016. hdl:11858/00-001M-0000-0012-EB54-F. PMID 15989958.
- ^ Su H, Caldwell HD (January 1992). "Immunogenicity of a chimeric peptide corresponding to T helper and B cell epitopes of the Chlamydia trachomatis major outer membrane protein". The Journal of Experimental Medicine. 175 (1): 227–35. doi:10.1084/jem.175.1.227. PMC 2119084. PMID 1370528.
- ^ Figueiras AM, González-Jaén MT, Candela M, Benito C (2006). "Genic heterozygosity, chromosomal interchanges and fitness in rye: any relationship?". Genetica. 128 (1–3): 273–86. doi:10.1007/s10709-005-6242-2. PMID 17028957.
External links