Sorex araneus polyomavirus 1
| Sorex araneus polyomavirus 1 | |
|---|---|
Virus classification 
| |
| (unranked): | Virus |
| Realm: | Monodnaviria |
| Kingdom: | Shotokuvirae |
| Phylum: | Cossaviricota |
| Class: | Papovaviricetes |
| Order: | Sepolyvirales |
| Family: | Polyomaviridae |
| Genus: | Alphapolyomavirus |
| Species: | Sorex araneus polyomavirus 1
|
Sorex araneus polyomavirus 1, formerly known as Human polyomavirus 12 (HPyV12), is a virus of the polyomavirus family that was first identified in human hosts and also infects shrews.[1] It was discovered and reported in 2013 after isolation from the organs of the gastrointestinal tract, particularly the liver.[2] The virus was renamed to Sorex araneus polyomavirus 1 in 2018, after discovery of the same virus in shrews.[1] Infecting multiple hosts is rare among mammalian polyomaviruses.[3]
Discovery
HPyV12 was first discovered in 2013 by generic PCR used to screen samples of the organs of the gastrointestinal tract. HPyV12 was identified first and most commonly in liver samples; it was also occasionally detected in the colon and rectum and in feces.[2]
Taxonomy
The HPyV12 genome follows the typical organization for a polyomavirus, containing a small and large tumor antigen and three viral capsid proteins; it has no open reading frame corresponding to an agnoprotein. In the 2015 taxonomic update to the polyomavirus group, the International Committee on Taxonomy of Viruses classified HPyV12 as a member of the genus Alphapolyomaviridae, whose type species is murine polyomavirus (Mus musculus polyomavirus 1).[4] Following the discovery of highly similar polyomaviruses in shrews (Soricidae),[1] the virus was formally reclassified in 2018 as Sorex araneus polyomavirus 1.[5]
Prevalence
The prevalence of HPyV12 is not well characterized and published estimates from seroprevalence studies — that is, prevalence of detectable antibodies against viral proteins indicating either past or present exposure — vary widely. A 2013 survey found that between 15–33% of healthy adults exhibited evidence of exposure, with slightly lower rates in children.[2] By contrast, a 2018 study in an Italian population reported over 90% prevalence,[6] while another 2018 survey in Dutch adults found prevalence to be around 4%, among the lowest of the polyomaviruses known to infect humans.[7]
Clinical manifestations
There is no known clinical significance associated with HPyV12.[8]
References
- ^ a b c Gedvilaite, Alma; Tryland, Morten; Ulrich, Rainer G.; Schneider, Julia; Kurmauskaite, Vaida; Moens, Ugo; Preugschas, Hannah; Calvignac-Spencer, Sébastien; Ehlers, Bernhard (1 December 2017). "Novel polyomaviruses in shrews (Soricidae) with close similarity to human polyomavirus 12". Journal of General Virology. 98 (12): 3060–3067. doi:10.1099/jgv.0.000948. PMID 29095685.
- ^ a b c Korup, Sarah; Rietscher, Janita; Calvignac-Spencer, Sébastien; Trusch, Franziska; Hofmann, Jörg; Moens, Ugo; Sauer, Igor; Voigt, Sebastian; Schmuck, Rosa; Ehlers, Bernhard; Qiu, Jianming (13 March 2013). "Identification of a Novel Human Polyomavirus in Organs of the Gastrointestinal Tract". PLOS ONE. 8 (3): e58021. Bibcode:2013PLoSO...858021K. doi:10.1371/journal.pone.0058021. PMC 3596337. PMID 23516426.
- ^ Ehlers, Bernhard (10 October 2019). "Novel Polyomaviruses in Mammals from Multiple Orders and Reassessment of Polyomavirus Evolution and Taxonomy". Viruses. 11 (10): 930. doi:10.3390/v11100930. PMC 6833039. PMID 31658738.
- ^ Polyomaviridae Study Group of the International Committee on Taxonomy of, Viruses; Calvignac-Spencer, S; Feltkamp, MC; Daugherty, MD; Moens, U; Ramqvist, T; Johne, R; Ehlers, B (29 February 2016). "A taxonomy update for the family Polyomaviridae". Archives of Virology. 161 (6): 1739–50. doi:10.1007/s00705-016-2794-y. hdl:10037/13151. PMID 26923930.
- ^ "ICTV Taxonomy history". International Committee on Taxonomy of Viruses. Retrieved 9 December 2020.
- ^ Gaboriaud, Pauline; Ferté, Marion; Arnold, Françoise; Leblond, Valérie; Nicol, Jérôme; Debare, Heloïse; Le Meur, Mélanie; Martini, Fernanda; Tognon, Mauro; Touzé, Antoine (1 December 2018). "Age-specific seroprevalence of human polyomavirus 12 and Saint Louis and New Jersey polyomaviruses". Emerging Microbes & Infections. 7 (1): 22. doi:10.1038/s41426-018-0026-0. PMC 5841233. PMID 29511157.
- ^ Kamminga, Sergio; van der Meijden, Els; Feltkamp, Mariet C. W.; Zaaijer, Hans L. (23 October 2018). "Seroprevalence of fourteen human polyomaviruses determined in blood donors". PLOS ONE. 13 (10): e0206273. Bibcode:2018PLoSO..1306273K. doi:10.1371/journal.pone.0206273. PMC 6198985. PMID 30352098.
- ^ Rinaldo, Christine Hanssen; Hirsch, Hans H. (August 2013). "The human polyomaviruses: from orphans and mutants to patchwork family". APMIS. 121 (8): 681–4. doi:10.1111/apm.12125. PMID 23781946. S2CID 29518518.